Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015888618.1_cds_XP_016443211.1_38390
CDS Infomation

[gene=LOC107768603] [db_xref=GeneID:107768603] [protein=cysteine protease ATG4-like isoform X2] [protein_id=XP_016443211.1] [location=complement(join(60201..60421,60527..60597,60683..60738,62105..62243,64323..64702,64901..64951,65429..65514,65622..66081))] [gbkey=CDS]
Sequence

ATGCCTAAAAAAACCCAATTTAGTAAAAGTTCGTCTGATTCAGATTCTCCAAGAAAAAAT
CTTGGTTCTTTAGTTTCTTCAGAACCAGAACCAGGACCAAGCAGTAACAAAAAATCTTCT
GTTTGGTCTGGTTTTTTGGTTTCTCCTTTTTCAATCTTTGATACTGAGCCAAAAGGGTGT
TTAAAAAAAGGTGACTTAAGTTCAAAGAAGTATTATAATGGTATTGGTATTAATTGGACT
AGTGCTGTGAAAAGAATGATGAATAGTGGCTCAATGAGGAGGATTTTTGGGATTAATAAA
ACTGGGATTCCTAATGGCTCTAAAAGTGATATTTGGCTTTTAGGTGTTTGTTATAAAGTT
GTTCAAGATGATGATCCATCCATTGAACCAACTCAAAGTGAAGGTTTTTCTGCTTTTGTT
GATGATTTCTCATCTAGGATTCTTGTTACATATCGAAAAGGGTTTCCTCCTATTGGAGAT
TCTAAGTATACCAGTGATGTTAATTGGGGTTGCATGCTTAGGAGCAGTCAGATGCTTGTT
GCTCAGGCTCTACTTCTTCATCGATTAGGAAGATCTTGGAGAAAATCTTTGGACAAGCCG
CATGACCAAAAGTATGTTGAGATATTGCACCTTTTTGGTGATTCAGAGGAGTCAGCTTGC
TCTATCCACAATCTCCTTCAAGCCGGGAAGACATATGGTCTTTCTCCTGGATCATGGGTG
GGCCCATATGCAATGTGTCGCACTTGGGAAACATTAGCACGAAGCAAGAGAGAAGAAATG
GGGAATGCTGACATGTCTTCTCTCATGTCTATCTATGTTGTATCTGGGGATGAAGATGGC
GAAAGAGGCGGAGCGCCGGTGCTCTGTGTTGAGGACATTGTCAGGCATTGTTCTGACTTG
TCAAAAGGCGAAGCTGACTGGATACCTGTTCTTTTCTTAGTTCCGTTGGTTCTTGGACTT
GACAAAATCAATTCAAGGTATCTTCCTTTACTGGCAGCTACATTCAGTTTTCCTCAAAGC
CTTGGGATCCTAGGTGGCAGACCTGGAGCCTCGACCTACATTGTCGGCGTGCAGGATGAT
CAAGCCTTTTATCTTGATCCACATGAAGTTCAGCCAGTTGTTGATATTAAAACGGATAAG
TTAGATATTGATACTTCATCTTATCACTGCAATACTGTAAGGCATTTCCCTCTGGATTCA
ATTGATCCATCTTTGGCAATCGGATTTTATTGTAGAGATAAAAGTGATTTTGATGATTTC
TGTATACGGGCATCTAAGTTGGTGGATCAATCAAACGGTGCTCCATTGTTTACGATAACT
GAAACTCGTAGCCCAGCCACATCAGTTGAGTATAACGACAGGGTGACTAGTAATTCTGGG
GTTCCAGAACTGGACTCCTTCGATGCTGTGGGCCCGGGTGAGTCGGATGGTAGTAGACCT
GAAGATGAGTGGCAACTCCTTTGA

Peptide Sequence

PEP ID

XP_016443211.1
PEP Infomation

PREDICTED: cysteine protease ATG4-like isoform X2 [Nicotiana tabacum]
Sequence

MPKKTQFSKSSSDSDSPRKNLGSLVSSEPEPGPSSNKKSSVWSGFLVSPFSIFDTEPKGC
LKKGDLSSKKYYNGIGINWTSAVKRMMNSGSMRRIFGINKTGIPNGSKSDIWLLGVCYKV
VQDDDPSIEPTQSEGFSAFVDDFSSRILVTYRKGFPPIGDSKYTSDVNWGCMLRSSQMLV
AQALLLHRLGRSWRKSLDKPHDQKYVEILHLFGDSEESACSIHNLLQAGKTYGLSPGSWV
GPYAMCRTWETLARSKREEMGNADMSSLMSIYVVSGDEDGERGGAPVLCVEDIVRHCSDL
SKGEADWIPVLFLVPLVLGLDKINSRYLPLLAATFSFPQSLGILGGRPGASTYIVGVQDD
QAFYLDPHEVQPVVDIKTDKLDIDTSSYHCNTVRHFPLDSIDPSLAIGFYCRDKSDFDDF
CIRASKLVDQSNGAPLFTITETRSPATSVEYNDRVTSNSGVPELDSFDAVGPGESDGSRP
EDEWQLL

Transcript Sequence

Gene sequence data has not been registered.